|

Open source protein models

Close-up of a vintage typewriter with 'Open Source' typed on paper, conveying creativity.

A company called Profluent (profluent.bio) has been developing protein models that can be used for designing new proteins (https://www.nature.com/articles/s41587-022-01618-2), modeling of new CRISPR-Cas sequences (https://www.nature.com/articles/s41586-025-09298-z) and developing LLM for protein generation (https://www.biorxiv.org/content/10.1101/2025.11.12.688125v1.article-info).

What is amazing is that they have open sourced all their models and Profluent-E1 is available in GitHub to download and use. (https://github.com/Profluent-AI/E1)

Wonder how many people are using it right now?

Similar Posts

  • Judging art

    Art especially with pencil and paper is the culmination of human esthetic and often times is dependent on the eye of the beholder. Some artwork that is meaningful to one person is not so understandable or sometimes even ugly to the other person. So how do you judge art. There are several ways to do…

  • | |

    Heart rate variability

    By definition, heart rate variability is the time between each heart beat. This is called the R-R interval and shows the beat modulation of the sino-atrial node whose time variation is controlled by the autonomic nervous system. This matters because sympathetic (fight or flight) or parasympathetic (rest and digest) activity governs cardiac dynamics. A higher…

  • LoRa in AI image generators

    This stands for Low Rank adaptation. In AI terms, this is a small add-on to the model that makes it do specific things. It is usually used in the context of stable diffusion. A large model takes very long to train with significant resources. However, sometimes, you need specific details – for example you could…

  • Heart valve

    Heart valve failure symptoms are shortness of breath, fatigue, swollen legs etc and usually you can see on the ultrasound. Calcium deposits are the main reason for heart valve failure. This blockage of the valve is called stenosis.This is mainly an age related disability and diet or other modifications will not affect their progression. Typically…

  • |

    Default mode network

    When we are not focused on a task, mind-wandering or just idling, specific regions of the brain such as medial pre frontal cortex, angular gyrus, hippocampus become activated and are called the default mode network. This is thought to be important for self referential thought, memory and future planning. It has been mapped with resting…