As scientists make biological models, it is difficult to create frameworks of mathematics and formula’s around it. Usually this requires significant customization for each model. Dr Sorger’ Lab has developed a Python framework for creating systems biology models. These translate the equations to the models and allow a tedious task to be significantly simplified by using Python as a language to simplify the mathematics. PySB is an open source framework that works with other languages like BioNetGen and Kappa and allows the models developed with PySB to be reused and developed. Being Python, PySB works other libraries like SciPy, NumPy and SymPy and makes model development easier. Look up the link below for more information.
Similar Posts
Big online databases – OMIM
Big data analysis has become the new buzzword. It is incredible to see how much data is available in online databases these days. There are many databases for the scientist – for example PubMed is the one that is used most prominently by researchers to look up a reference. However, there are many that are…
Big online databases – Drug Bank
Drug Bank is a great database if you are at a pharmaceutical or Biotech company. This database has enormous drug information about all the FDA approved drugs and some others. Each entry contains more than 150 items including chemical, structure, pharmacological and more importantly, drug target information. This data is also available to download and…
